rMFilter: acceleration of long read-based structure variation calling by chimeric read filtering
نویسندگان
چکیده
منابع مشابه
Improving PacBio Long Read Accuracy by Short Read Alignment
The recent development of third generation sequencing (TGS) generates much longer reads than second generation sequencing (SGS) and thus provides a chance to solve problems that are difficult to study through SGS alone. However, higher raw read error rates are an intrinsic drawback in most TGS technologies. Here we present a computational method, LSC, to perform error correction of TGS long rea...
متن کاملRead Your Published Papers
سخن سردبیر Editorial مجله دانشگاه علوم پزشکی رفسنجان دوره نوزدهم، دی 1399، 1014-1013 مقالات منتشر شده خودتان را بخوانید Read Your Published Papers محسن رضائیان[1] M. Rezaeian تا کنون در مجله دانشگاه، پیرامون مطالعه مستمر یک مقاله قبل از چاپ آن توسط نویسندگان، نکات مهمی را به رشته تحریر در آوردهایم [3-1]. مطالعهی چند باره یک مقاله، قبل از آن که مقاله منتشر گردد،...
متن کاملFPGA Acceleration of Short Read Alignment
Aligning millions of short DNA or RNA reads, of 75 to 250 base pairs each, to a reference genome is a significant computation problem in bioinformatics. We present a flexible and fast FPGA-based short read alignment tool. Our aligner makes use of the processing power of FPGAs in conjunction with the greater host memory bandwidth and flexibility of software to improve performance and achieve a h...
متن کامل“Read” and ‘Tailor’ Your Treatment
Introduction: Thesinonasal tract is an area that may be affected by various types of neoplastic lesions with more variety than what is encountered in other parts of the upper airway and food passage. Case Report: An elderly gentleman of 65 years complained of nose block on both sides for 3 months. On examination, he had firm polypoidal masses arising from the middle me...
متن کاملCookiecutter: a tool for kmer-based read filtering and extraction
Bioinformatics Institute, St. Petersburg, Russia Center for Algorithmic Biotechnology, Institute of Translational Biomedicine, St. Petersburg State University, St. Petersburg, Russia Theodosius Dobzhansky Center for Genome Bioinformatics, St. Petersburg State University, 41A Sredniy Avenue, 198207, St. Petersburg, Russia Oceanographic Center, Nova Southeastern University Ft Lauderdale, 8000 N. ...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ژورنال
عنوان ژورنال: Bioinformatics
سال: 2017
ISSN: 1367-4803,1460-2059
DOI: 10.1093/bioinformatics/btx279